rs222334088 SNP Detail

Summary

• ID
  rs222334088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAAGAGT GGTACGTGTG
  TCCCAGGACA ACTAGAGCTG TACACAGTGA GCTCTTGTCT CAAAAAAAAA AAAAAAAAAA
  AATCTAGAGA GAAGGCCAAA TCCAAACCAA AGCTTGAACA AGTAAACTCA AGGTCATGAC
  AGTAATACAA ACCAAGGAAG GCACTGGAAA CAGGAAAGCC ACGGAGAATA CCATGGACAC
  W
  GATGCTGGTT CTTTCATGTC CTTGTCACCT CCTATGGCTA CAATACAACA ATGACCAGAA
  CCAAGTTGAG ATGGGAAGGG TTTATTGCAC CTTCCAGGAC ACAATGCAGG GTCAAGGTGA
  GCAAGCCAGA AAGCAGACTT CCTCCACGGT CTCTACTCTG CTCCTGCCTT GCGCTCCTTC
  TGCATTGGCA CCCTTGACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss382237245	MGP_WTSI_11_3073470	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs222334088					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237245	MGP_WTSI_11_3073470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	886 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	1017 bp distal
Rr441483	regulatory region 441483	1251 bp distal
Rr441484	regulatory region 441484	517 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	506 bp proximal
Rr441487	regulatory region 441487	1711 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	670 bp upstream
Tssr106449	transcription start site region 106449	138 bp upstream