rs222341820 SNP Detail

Summary

• ID
  rs222341820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55885078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAAGTC AGGGGACTTA
  GGGAATGGAT TCTAGACAGT GCCACAGGAC AACAACTCAC CTCCAAGGAG TTACTTAGGA
  GAAGTTTTTA GTTTGAAGCG TTTTAAGAGA CATTCCCCCT TTTCATTTTA AGCGGGGAGA
  GAGGCTGTAA CTGGGTTAGC CCTCTCCCAG TTTCCTTTTC CCTTGTCCTT TGAGAAAGCT
  R
  GGAAGTAAAT TCTTAGCCCA CGCTGCCTGC CGGTGGCGTT CGCAGCACTT TCCGACAGAT
  TGTTGCTGGG TGATCAGGGC CTGTCCATCA GCGGATAGAG AACTTGCAGT TTACTTAAGA
  AATTGCGGGA GCCACAAAAG CAGCTGCCGG GAGTGTGGTG GTCTCCGTGA ATAGAGGGAG
  GGAAGGCAAT TAGGGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402852440	MGP_WTSI_19_55971136	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222341820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402852440	MGP_WTSI_19_55971136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55885078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11085	CpG island 11085	877 bp distal
Rr363576	regulatory region 363576	within coordinates
Tcf7l2	transcription factor 7 like 2, T cell specific, HMG box	within coordinates
Tssr157129	transcription start site region 157129	1719 bp downstream
Tssr157130	transcription start site region 157130	1686 bp downstream
Tssr157131	transcription start site region 157131	1492 bp downstream
Tssr157132	transcription start site region 157132	1471 bp downstream
Tssr157133	transcription start site region 157133	1422 bp downstream
Tssr157134	transcription start site region 157134	1232 bp downstream
Tssr157135	transcription start site region 157135	1192 bp downstream
Tssr157136	transcription start site region 157136	1163 bp downstream
Tssr157137	transcription start site region 157137	1149 bp downstream
Tssr157138	transcription start site region 157138	1135 bp downstream
Tssr157139	transcription start site region 157139	1080 bp downstream
Tssr157140	transcription start site region 157140	1065 bp downstream
Tssr157141	transcription start site region 157141	1055 bp downstream
Tssr157142	transcription start site region 157142	226 bp downstream
Tssr157143	transcription start site region 157143	1267 bp upstream
Tssr157144	transcription start site region 157144	1295 bp upstream
Tssr157145	transcription start site region 157145	1305 bp upstream
Tssr157146	transcription start site region 157146	1617 bp upstream
Tssr157147	transcription start site region 157147	1631 bp upstream
Tssr157148	transcription start site region 157148	1950 bp upstream