rs222343029 SNP Detail

Summary

• ID
  rs222343029
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAAGGC TGGTAAACAG
  AATTTAACCC TATGTTGCTC TAATGATTCC CTATGGAACC CATTCCTCAA GACATTTCTC
  TCTTGATTGG CGCAGCTCAA CAGAAGCTAA CAGGCTTCTG AGGCTATGTG TCAGGGACCC
  AGAGCTGTCT CCAGCAAGGC GAGGCAGAAG GAACACTTGG GATACACAGA TCGAGATATT
  M
  CCTGTCAGGG CTCTGCTCCT CACCCGAGTA GAATGTTGTC CCTTCCCGCC ACTGTGCAGC
  CCTGCAGGAA CAGGTCCTGG TTAGACTGCC AAGCTCCCGG GGAGAGGTCA TCCCTTTGTC
  TTTCGCGCTC ACAGGCCCAC ACCTCCTTAC CACCTGACTC AATGTGTTTG CACAGAGTGT
  GGAAGATGCA CACGTGAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135623	CHEV_9_99260502	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222343029					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1378 bp distal
Esyt3	extended synaptotagmin-like protein 3	1526 bp upstream
Rr198328	regulatory region 198328	665 bp proximal
Rr206935	regulatory region 206935	1335 bp distal
Tssr91051	transcription start site region 91051	1531 bp upstream