rs222353601 SNP Detail

Summary

• ID
  rs222353601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135936373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtttaatt ttatctatat gagtacaccg
  cagttgtctt cagacatacc agatgagggc atcggatccc actacaaatg gttgtgagtc
  accatatggt tgcttgaaat taaactcagg acctctggaa gagcaatcag tgctcttaac
  Y
  gctgaaccac cactctgact ccTCGATATT ATTTCTAATC AACCTAATAA CTTGAGCTGG
  TGGAGTGtat gatatcagct atttggaatt ttgagacagg aagattgctg gaaccccgga
  ttttggagtt agcctgggca acatagtgaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319994328	CHEV_1_137905212	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222353601					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135936373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	739 bp distal
Rr12652	regulatory region 12652	1428 bp proximal
Rr19440	regulatory region 19440	828 bp proximal
Rr28609	regulatory region 28609	within coordinates
Rr30723	regulatory region 30723	1829 bp proximal
Rr372097	regulatory region 372097	within coordinates
Tmem9	transmembrane protein 9	within coordinates