rs222355406 SNP Detail

Summary

• ID
  rs222355406
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72812093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTTTTA TTAGAAATCT
  ACCTCAAGCA AGAATAAACA TCCCAATTAT TGTACTTGTA TGTTTTGTAT GAGGTTGAAG
  GCAAAGCATT TAAACTAGCT TTGTATACAC GAACTTGAAA ATTCATGGGG GGGAGGGGCA
  GTGCATACAT CGGTTTCAGA AGCCTTTTTG GACTTGTTTT TTTGTTTTTT GGTTTTTTCT
  S
  GTTGGTTGTG GTTTTTGTTT TCAAGACAGT TTCATGTGTA GCCTTGGTTG TCCTGAAACT
  GGATTTGTAG ACCAGGTTCA CCTGGAACTC ACAGAAACCC ACCTGCCTCT GCCTCCTGAG
  TACTGGGATT AAAAGTGGGG GCCATCTCCG CCAACTACTT CGTGGTAATT TTTAATACAG
  TGACACATGT TCTCTTTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354450974	MGP_WTSI_2_72819806	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222355406					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354450974	MGP_WTSI_2_72819806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72812093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	653 bp distal
D130067C23Rik	RIKEN cDNA D130067C23 gene	149 bp downstream
Rr373352	regulatory region 373352	420 bp downstream
Rr559064	regulatory region 559064	813 bp distal
Rr559065	regulatory region 559065	1568 bp proximal
Sp3	trans-acting transcription factor 3	1303 bp upstream
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr18363	transcription start site region 18363	1773 bp downstream
Tssr24526	transcription start site region 24526	1278 bp upstream
Tssr24527	transcription start site region 24527	837 bp upstream
Tssr24528	transcription start site region 24528	809 bp upstream