rs222358254 SNP Detail

Summary

• ID
  rs222358254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13842502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGCAGAG CGGCGGGAAT CTAGGTCCCT TCTCGGCTCG
  GTAAGTGGCC TCGGTTCTGT GTTTTTCCTG CCTGCACCAG AGATCGAGCT TGTTTCACTT
  Y
  ACCCTGAAAT CGCCTTCGCC CAACTCCATC GCCCCCTTCG CGGCGCGCGC CCCCGGCCGC
  TTTCCTGGTG GCCCAGGGGT AAGGGTCGGA GGAGGCGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498376	MGP_WTSI_10_13686564	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222358254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498376	MGP_WTSI_10_13686564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13842502 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	783 bp downstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	1016 bp upstream
Gm66890	predicted gene, 66890	1101 bp downstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	within coordinates
Rr368929	regulatory region 368929	1353 bp upstream
Rr384171	regulatory region 384171	1301 bp downstream
Rr427855	regulatory region 427855	1027 bp distal
Rr427856	regulatory region 427856	369 bp distal
Rr427857	regulatory region 427857	470 bp distal
Rr427858	regulatory region 427858	within coordinates
Tssr3141	transcription start site region 3141	644 bp downstream
Tssr92403	transcription start site region 92403	1944 bp downstream
Tssr92404	transcription start site region 92404	1911 bp downstream
Tssr92405	transcription start site region 92405	1883 bp downstream
Tssr92406	transcription start site region 92406	1715 bp downstream
Tssr92407	transcription start site region 92407	1510 bp downstream
Tssr92408	transcription start site region 92408	1479 bp downstream
Tssr92409	transcription start site region 92409	1446 bp downstream
Tssr92410	transcription start site region 92410	1419 bp downstream
Tssr92411	transcription start site region 92411	919 bp downstream
Tssr92412	transcription start site region 92412	887 bp downstream
Tssr92413	transcription start site region 92413	866 bp downstream
Tssr92414	transcription start site region 92414	648 bp downstream
Tssr92415	transcription start site region 92415	557 bp downstream
Tssr92416	transcription start site region 92416	536 bp downstream
Tssr92417	transcription start site region 92417	514 bp downstream
Tssr92418	transcription start site region 92418	474 bp downstream
Tssr92419	transcription start site region 92419	219 bp upstream
Tssr92420	transcription start site region 92420	251 bp upstream
Tssr92421	transcription start site region 92421	376 bp upstream
Tssr92422	transcription start site region 92422	1063 bp upstream
Tssr96784	transcription start site region 96784	1108 bp upstream
Tssr96785	transcription start site region 96785	1083 bp upstream
Tssr96786	transcription start site region 96786	within coordinates
Tssr96787	transcription start site region 96787	22 bp downstream
Tssr96788	transcription start site region 96788	63 bp downstream
Tssr96789	transcription start site region 96789	718 bp downstream
Tssr96790	transcription start site region 96790	875 bp downstream