rs222359185 SNP Detail

Summary

• ID
  rs222359185
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32521325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGCTTAA GAACCAGTCT GAAAACTTGG GAAAAGAGAA
  CCATCTGAAA GATCTCTAGC ATTAGAAAAG AGAGGTGACA TGGGGGGGGG TGCACAGTTC
  W
  ATGGTAGAGC ACCCCTGAGG AGTCCCTGAC TTGACGTTTT TATCCTCAAC CCTGGACCCT
  TTTCCTACCT CTTCTATCTT ACTAGTTGGT AAACGTTTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388186308	MGP_WTSI_13_32429211	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	A	A	A	T	A	T	T	A	A	T	T	A	T	A	A	T	A	A	T	A	T	A	T	A	A	T	T	T	T	T	A	T	A	A	A	T	T	T	A	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222359185					SNP	T	T	T	A	A	A	A	A	T	A	T	T	A	A	T	T	A	T	A	A	T	A	A	T	A	T	A	T	A	A	T	T	T	T	T	A	T	A	A	A	T	T	T	A	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388186308	MGP_WTSI_13_32429211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32521325 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	1477 bp upstream
Cpgi5422	CpG island 5422	606 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr369665	regulatory region 369665	1469 bp upstream
Rr476844	regulatory region 476844	1385 bp proximal
Rr476845	regulatory region 476845	1388 bp proximal
Tssr121995	transcription start site region 121995	1158 bp downstream
Tssr121996	transcription start site region 121996	1212 bp downstream
Tssr121997	transcription start site region 121997	1223 bp downstream