rs222379700 SNP Detail

Summary

• ID
  rs222379700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:72990678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGTCA AACAGGTAAT
  TCCCAAGTCA AACAAATACT CTTCAGTGGC TCAAGAAAGC CTTCCATGGT AAAGCTATAT
  CTTTTGATTT CTAAAGTCCC TGTCGATTCT TTGGGTGACA AGGAGCAGTT TGGGCCTCCA
  GAGGGGGAAA ATAAAAGGCA TCAAGAATGC AAATATTAAG AAATTGTTCA CTTTCCTGGT
  Y
  ATGTGAGTGA CATGTCCTAG CGACCTGAAA CTGAGTATCT CCTTAATTTT GTGCCTTGGT
  TGGTGGTGGT GACTCTAACT AGCAGACCTC TGGAGGTTTG GGGTCAGCCT GGTCTACAAG
  GTGAGTTTCA GACCAACCTT GGCTACACAG TGAGGTTTTG TTTTGTTGTT TTTAAACACA
  GAGTGTTTCA GAAAGCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386473803	MGP_WTSI_12_74044891	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222379700					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386473803	MGP_WTSI_12_74044891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:72990678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4743	CpG island 4743	1914 bp distal
Cpgi4744	CpG island 4744	1454 bp proximal
Gm26709	predicted gene, 26709	1903 bp upstream
Rr265547	regulatory region 265547	1122 bp proximal
Six6	sine oculis-related homeobox 6	within coordinates
Tssr113771	transcription start site region 113771	1728 bp upstream
Tssr113772	transcription start site region 113772	1774 bp upstream
Tssr113773	transcription start site region 113773	1786 bp upstream
Tssr113774	transcription start site region 113774	1796 bp upstream
Tssr113775	transcription start site region 113775	1859 bp upstream
Tssr113776	transcription start site region 113776	1883 bp upstream
Tssr116636	transcription start site region 116636	1539 bp downstream