rs222389886 SNP Detail

Summary

• ID
  rs222389886
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:79040248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctctacag agtgagttcc aggataacca
  gggctacata aagaaaaacc atctcaagaC CAATCCAAAC CAAACCAAAG AAGCTTAGGA
  TATAACTTAG TGGTAAATTA CTGGGGGACC AAGCTCCAGT ACTacacata cacacacaca
  S
  acacacacac acacacagag agagagagag agagagagag agagagagag agagagtagg
  gagaAGATAA ACACAAATAA ATAGCACCAA CAATAACAAA CAAGAGCTGG GGATGTAACT
  CGATGTACAG ACCTGTAAAA TGCACAAAAG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324107626	CHEV_12_80094461	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222389886					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79040248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D12Mit4	DNA segment, Chr 12, Massachusetts Institute of Technology 4			within coordinates
Tmem229b	transmembrane protein 229B			Intron
				Noncoding-Transcript-Variant