rs222390949 SNP Detail

Summary

• ID
  rs222390949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87754674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAAGGG GAGCAGGGGG
  ACGGATGACG TAAGTGGGTT CCACTCCCAG GCAAGCCGTT AAAAGGCCGG GGGAACCGCG
  CCTGGCAGGA GCTACTTTGC GGCGCGGAGG AGCACCGCGG TGGCGGTCGA CCAGGCGAAC
  CTCGTTGAGC TTGCTGCTGA TTGGCTGATT TGTACCTGCA ATGCGTCACT TTCTCTCGCA
  R
  CCGGAACGCG GTTGCGGCTT CTGCCGTTGC TTGCTCGCGC CGCGCTGTCC TGGCAACTGC
  GCCAGGCGGC AGCGTGGCTC TCTCTGCGCT CGGCTGGAGG ACCTTCTTCC ACCCGTCCTG
  CCTGCCACAG ACACACGCAC ACACTCACCT TCCCGCCCCG TATGGAGGTG CTGCTGACAA
  AAACAACACG GGCCAAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399364127	MGP_WTSI_17_87846586	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222390949					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399364127	MGP_WTSI_17_87846586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87754674 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	311 bp upstream
Cpgi9626	CpG island 9626	within coordinates
Gm65472	predicted gene, 65472	within coordinates
Rr370330	regulatory region 370330	325 bp downstream
Rr370331	regulatory region 370331	5 bp downstream
Rr393074	regulatory region 393074	776 bp downstream
Rr532694	regulatory region 532694	1199 bp distal
Rr532695	regulatory region 532695	633 bp distal
Rr532696	regulatory region 532696	401 bp distal
Rr532697	regulatory region 532697	within coordinates
Tssr146185	transcription start site region 146185	1096 bp downstream
Tssr146186	transcription start site region 146186	566 bp downstream
Tssr146187	transcription start site region 146187	8 bp downstream
Tssr149773	transcription start site region 149773	377 bp upstream