rs222396679 SNP Detail

Summary

• ID
  rs222396679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGAGAT GGTTCTGTTG
  GCAAAGTTCT TGGTGTTCAA ACTCAAGGAC CTGAGTTTAA TTCCCAGCCA ACATAGAAAT
  GTTCAATGGC AGCTGCACTG ACTAAACCCC AACGTATCAA AGAAGAGTGT GGTTGCTAGG
  GCTTTCTGAA CCTAAGTCTG TTTAAGTGAA TCAGAAAACT CCAGACTCAA TGAGAACATA
  Y
  GTCTCAAAAG ATATGCTAGG TAGTGGCTGA GGAATATACC TGAAGCCTCC ACATACATGT
  GCACACATAT ATATGAATGA ACACTTACAT ACACATACAC AGACACACAC ACAGACACAC
  ACACACACAC ACACACACAC ACACACACAC ATAAACACAC ACATGCTGGT CTGGAGTTAA
  GGCTTTGAAA AGCTCCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560338	MGP_WTSI_9_7354080	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222396679					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560338	MGP_WTSI_9_7354080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354080 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	534 bp downstream
Tssr83713	transcription start site region 83713	1694 bp downstream
Tssr83714	transcription start site region 83714	1510 bp downstream
Tssr83715	transcription start site region 83715	1466 bp downstream
Tssr83716	transcription start site region 83716	1173 bp downstream
Tssr83717	transcription start site region 83717	1162 bp downstream
Tssr83718	transcription start site region 83718	1128 bp downstream
Tssr83719	transcription start site region 83719	1095 bp downstream
Tssr83720	transcription start site region 83720	1062 bp downstream
Tssr83721	transcription start site region 83721	831 bp downstream
Tssr83722	transcription start site region 83722	550 bp downstream
Tssr83723	transcription start site region 83723	503 bp downstream
Tssr83724	transcription start site region 83724	184 bp downstream
Tssr83725	transcription start site region 83725	47 bp downstream
Tssr83726	transcription start site region 83726	18 bp upstream
Tssr83727	transcription start site region 83727	630 bp upstream
Tssr83728	transcription start site region 83728	722 bp upstream
Tssr83729	transcription start site region 83729	744 bp upstream
Tssr83730	transcription start site region 83730	1224 bp upstream
Tssr83731	transcription start site region 83731	1238 bp upstream
Tssr83732	transcription start site region 83732	1279 bp upstream
Tssr83733	transcription start site region 83733	1316 bp upstream
Tssr83734	transcription start site region 83734	1744 bp upstream
Tssr83735	transcription start site region 83735	1766 bp upstream
Tssr88067	transcription start site region 88067	1067 bp upstream
Tssr88068	transcription start site region 88068	1021 bp upstream
Tssr88069	transcription start site region 88069	575 bp upstream
Tssr88070	transcription start site region 88070	671 bp downstream
Tssr88071	transcription start site region 88071	1335 bp downstream