rs222401526 SNP Detail

Summary

• ID
  rs222401526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72020328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCATGT CCCACTGTTT
  TAACATGTTT ATGGTAGGAG GTCACACATG CACAATGCTC TTATGGTGAG GAGAGGAAAA
  CATGCTGGCA TTGGTTTTCT GCTTTCACTT ACATCCTGGG CATTGAACTC AGGTCACCAG
  GCTTGGCGGC AAGCGCCTTT ACCAGCTGAG CCCTCTCTTC AGTCCTGGGC ATGCTCAGCT
  R
  TCTCCATCAG TTTCAAGCAG ATGATAAAGG CCACTCTGCT CGAGTGTCAG CTCTGGGGTT
  AGTCACGAGC ACTGACTGTG CTAGCTTTAA AGGTGTCAGT ACAGGAGCCT TCCTTCCATC
  TCCCAGGTCT CTGTGTCCCG CTGCAATCTC CACTTGCTAT GCAGCCAGTG TTGACCTTGG
  AGTTCCCACC CCTGCCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375117413	MGP_WTSI_8_74091583	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222401526					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375117413	MGP_WTSI_8_74091583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72020328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	1675 bp proximal
Nxnl1	nucleoredoxin-like 1	1083 bp upstream
Rr665115	regulatory region 665115	708 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	1198 bp upstream
Tssr77870	transcription start site region 77870	1182 bp upstream
Tssr77871	transcription start site region 77871	1273 bp upstream
Tssr77872	transcription start site region 77872	1973 bp upstream
Tssr81733	transcription start site region 81733	1072 bp upstream
Tssr81734	transcription start site region 81734	1058 bp upstream
Tssr81735	transcription start site region 81735	1052 bp upstream
Tssr81736	transcription start site region 81736	1044 bp upstream
Tssr81737	transcription start site region 81737	1032 bp upstream
Tssr81738	transcription start site region 81738	1779 bp downstream