rs222402957 SNP Detail

Summary

• ID
  rs222402957
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107563403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAAATC TCAGACCTGC
  CACCAAGAAA TTCTCAGCCA GAAGTTTGGA GTATGACCTG GGATATTTTA TTTAATTTTT
  AGCTTTTGAG ACTCACTATG TAGTCCTGGC TTACCTGGAA CTTGCTATGT AGACCAGGCT
  GGCCTCAAAC TCAGAAATCC AATTGCCTCT GGCTCCTGAG TGCTGGGATT AAAGGTGTGC
  A
  CCACCACATG TGGCAGTGAC CTGGGATTTT TAATAAACAG TCCAGGTGAT CCTGAAACAG
  ATTGGTGTGT TCACCAGCAG GATTAAAAAA AATTAAAAAA AAAAATCAAA GTCCTGAAGA
  AGACATTAAG TCCTCCCACA TTTGAAGTTC TAGTTTGTAT CTCCTTGAAT GATTCCTCAA
  TAATCAACAG GCCATGAACG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250223	CHEV_4_107378811	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222402957					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107563403 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	122 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	1722 bp distal
Rr597046	regulatory region 597046	1807 bp distal
Tssr38261	transcription start site region 38261	824 bp upstream
Tssr38262	transcription start site region 38262	850 bp upstream
Tssr38263	transcription start site region 38263	860 bp upstream
Tssr38264	transcription start site region 38264	870 bp upstream
Tssr38265	transcription start site region 38265	888 bp upstream