rs222412371 SNP Detail

Summary

• ID
  rs222412371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:58661485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATAGGCA TATGTACAAA
  GACTTTCATT GAAGATCTTA ATGACAAACA TCTTGGGAGA CATATTGTCT AAGTCAAACA
  GCTACAAGGA CAATAGCAAC TTGGGAATGG CTGTCAATGG CTTGCCTACG TGGGTTTTCA
  AGAATCCTAC CTGCCATCCC TGCCCACACA TGAATGATCA TAAAGCTACT GGAAGAAACG
  Y
  GACTCAAACA CTTTTCTACC CCAAACAGCT AATTACTTCA GATGCATCAA ACATCAGAAA
  CTCCAATTTC CGAACAAACA GAAAAACCCG TATCATTATC CACGGCTTCA TCGACAAGGG
  AGAAGAAAAC TGGCTATCTG ACATGTGCAA GGTGAGCCAT GGTGCTTTCT AAGAGAAAGT
  GTTTAGAGAC CAGCAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923764	MGP_WTSI_19_58747543	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222412371					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923764	MGP_WTSI_19_58747543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58661485 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	Intron
Tssr5571	transcription start site region 5571	68 bp upstream
Tssr157263	transcription start site region 157263	1332 bp downstream
Tssr157264	transcription start site region 157264	1274 bp downstream
Tssr157265	transcription start site region 157265	1222 bp downstream
Tssr157266	transcription start site region 157266	19 bp upstream
Tssr157267	transcription start site region 157267	33 bp upstream
Tssr157268	transcription start site region 157268	91 bp upstream
Tssr157269	transcription start site region 157269	688 bp upstream
Tssr157270	transcription start site region 157270	751 bp upstream
Tssr159957	transcription start site region 159957	1314 bp upstream
Tssr159958	transcription start site region 159958	1187 bp upstream
Tssr159959	transcription start site region 159959	62 bp downstream
Tssr159960	transcription start site region 159960	116 bp downstream