rs222419906 SNP Detail

Summary

• ID
  rs222419906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135301860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCCCAGG CTGGTCTGGA
  ACTCTTTAGT GATGATCTTC CCGCCTCAGC CTTCTGAGTG CTGGGATTAC AGGTGCGAGC
  CACCAGGCCG GGCTAGCAAC TTCCATATTA TTTTAAAAGG TAGCGGTACT CTATAGAGGG
  CAAGCGCCTT AGCTGGATCA CAGTGCACCA GCCTGGAAAC AAAACCCAAG TCTTCCTGCC
  Y
  TCTCACCAGA GCGTCTACCA AGGCACTCTG CTGTTTGAAT GTTAGTGTTA ACTCAGCACA
  CTCCCTCCCA GGACCTGTCA GGATCCAGAA AGCCCCTGGA AACAGCCCAG GCAAGCCCAT
  GGTAACTAAC ACCAACCACC CAGCTCTGTC ACCATTTGGA GTCCTGGTGA CTCCTGCAGT
  TAAGAATGTG GAGGTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351539943	MGP_WTSI_1_137270699	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222419906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351539943	MGP_WTSI_1_137270699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135301860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	314 bp proximal
Rr12587	regulatory region 12587	1341 bp proximal
Rr28595	regulatory region 28595	459 bp distal
Rr28596	regulatory region 28596	within coordinates
Shisa4	shisa family member 4	within coordinates
Tssr13841	transcription start site region 13841	1790 bp upstream
Tssr13842	transcription start site region 13842	912 bp upstream
Tssr13843	transcription start site region 13843	701 bp upstream
Tssr13844	transcription start site region 13844	667 bp upstream
Tssr13845	transcription start site region 13845	639 bp upstream
Tssr13846	transcription start site region 13846	158 bp upstream
Tssr13847	transcription start site region 13847	297 bp downstream
Tssr13848	transcription start site region 13848	797 bp downstream
Tssr13849	transcription start site region 13849	814 bp downstream
Tssr13850	transcription start site region 13850	833 bp downstream
Tssr13851	transcription start site region 13851	977 bp downstream
Tssr13852	transcription start site region 13852	1101 bp downstream
Tssr13853	transcription start site region 13853	1111 bp downstream
Tssr13854	transcription start site region 13854	1128 bp downstream
Tssr13855	transcription start site region 13855	1146 bp downstream
Tssr13856	transcription start site region 13856	1160 bp downstream