rs222423778 SNP Detail

Summary

• ID
  rs222423778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100807947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAAGGAC AACCCATTCA
  CATCGGTGAC CCAGGTCAGT GTCCACCCAA CATGGGCCTG AAAAGCACAC AGGGGCTTGT
  GCTGTTCTTA TGGGGAGGGT CTCAAGGGTG AGGGACTGGG GTGAAACCCA GAAGTCCAGT
  ACTGGGTGCT CTCAGGCTTA AGGCAGCACT GTGCCACACT AGGGGGCCTC ATCTTGAGGA
  Y
  TTGTGATGCA CACTCAACTC CTATGAGTAT CATGTGATCA CCACTGGCCT TGGGGATTGG
  AGGGTCACAG TGGGACTCTT TGTTTCAGGT GTTATCCACA ACCATGCACA CCACACCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CACACACACA CACACCATAA CATTATTAAA
  TAAAACTCAA ATTTGCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss387107175	MGP_WTSI_12_102079898	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs222423778					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387107175	MGP_WTSI_12_102079898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100807947 () rs orientation: forward

Symbol	Name	Function Class
Dglucy	D-glutamate cyclase	within coordinates
Rr403460	regulatory region 403460	148 bp downstream
Rr471351	regulatory region 471351	1969 bp distal
Rr471352	regulatory region 471352	1444 bp distal
Rr471353	regulatory region 471353	264 bp distal