rs222427939 SNP Detail

Summary

• ID
  rs222427939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36074982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGAGGGT CTTCTGAAGA GGCTCTCAGC
  AAGGGTGTGC TGCCAGGCCT TCAGGGTGAG CTCTAGGGGC GCTCCAGCCC TACTAGGGTT
  GGGGGCAGAG GGAGAGGCTC GCGAGTGCTG TCCACTGCTT TGTGTTTCCA CGGTGCCTTC
  R
  GCCTGGATCA GTTCCACCTC CCGTCCCCAA GCAGGTCCAG GGGGCTGGTT GACAGAGAAA
  GTGTGTGTCC TAGTGTGGAC AGTTGGACCT GGGGGCCTTG CCTAAGAGCT AGGATGGTTC
  CCGCAGGAGC AGGAAGGAAG TAAGAAGGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584119	CHEV_18_36101583	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222427939					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36074982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9858	CpG island 9858	1953 bp distal
Gm56493	predicted gene, 56493	within coordinates
Rr536030	regulatory region 536030	1512 bp distal
Rr536031	regulatory region 536031	within coordinates
Rr536032	regulatory region 536032	8 bp proximal
Rr536033	regulatory region 536033	480 bp proximal
Tssr150585	transcription start site region 150585	440 bp upstream