rs222429316 SNP Detail

Summary

• ID
  rs222429316
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:24354255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGTTGC TGCTTTTTCA
  GAGGGTCCTG GATAAAGTTC CCAGCATCCA TAGGGCGGTT CCCAATCATT TGTAACTCCA
  GTTCCAGGGC GACCCAGTGC ACTTTTCTGG CCTCTAACAT ATTACACAAA CATACATTCA
  GTTAAACGCT CATGTAGAAA ATAAATACTA AATCTAAATT AAAATAAAAA TTAAAATAAT
  W
  AAAAAAAAAG AATTCTGAGG TGATCCTAAA CTGAGTCAAG TTGACAGTTA AAACTATCAC
  AGTGCCCCCT AGTGTAGACT CTTGCCAGCT TCGGGTGTTG AGAGCTATCC ACCTTTGCTG
  TCCTATTCTG GTCCTATTCT GTACCAGTTT CTCTGACAGC CCAGACTTCT CATCTCTTGA
  GTGCTAGCAA GTGGCCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	JF1/MsJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ
ss385309051	MGP_WTSI_12_24989119	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	JF1/MsJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ
rs222429316					SNP	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385309051	MGP_WTSI_12_24989119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:24354255 () rs orientation: forward

Symbol	Name	Function Class
D12Mit282b	DNA segment, Chr 12, Massachusetts Institute of Technology 282b	1172 bp distal
Gm4120	predicted gene 4120	within coordinates