rs222431920 SNP Detail

Summary

• ID
  rs222431920
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175460403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCGCGC GCGCGCGCGC
  GAGTAATTTC CATACGTGAC AGAAAATATG CAGAACTTGT CTTATGTATT TATATCTCAC
  TTATCCCAAT GTCCTCCAAA TCCACTCATT CTTACTGAGA TGACCTAAGA CACATTTTTG
  TTTTTAAATA ACAGGATTTC ATTCTTCTTT ACCGCCAAAC ACTACTCCAT TGTGTGTGTG
  C
  GTACCATATT TTCTTCATTC GTTCATTCAC CAGCAGCCAT CACGGCAATA AATATGGGTA
  ACAGCATTTG TTTTAAATTA TTCCTTCCAG GAACTGTATT TGATATCCAC TAAATACACG
  AGTGTCTATT TTATCATTTT GATTTAGCAT CCCCTAAAAG ACAAAACAGA TTTCACTTTA
  TTTTGCTTCC AAACATGACT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151900	CHEV_1_177562968	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222431920					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175460403 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	within coordinates
Rr396618	regulatory region 396618	718 bp downstream
Tssr10313	transcription start site region 10313	859 bp downstream
Tssr10314	transcription start site region 10314	836 bp downstream
Tssr10315	transcription start site region 10315	813 bp downstream
Tssr10316	transcription start site region 10316	780 bp downstream
Tssr10317	transcription start site region 10317	743 bp downstream
Tssr10318	transcription start site region 10318	736 bp downstream
Tssr10319	transcription start site region 10319	726 bp downstream
Tssr10320	transcription start site region 10320	704 bp downstream
Tssr10321	transcription start site region 10321	686 bp downstream
Tssr10322	transcription start site region 10322	677 bp downstream
Tssr10323	transcription start site region 10323	652 bp downstream