rs222433638 SNP Detail

Summary

• ID
  rs222433638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATACTTTC CAAGCTGAGG
  TCATGAAGAA TCTAGGAGAT GGAGTGACTG AGTACAGAGA TCATCAACCG GAAGGAGATA
  TCTATCAGCA CTGAGCTGTG GGGGGAGAGT GAATCGCAGA GCCCAATCCC CCCAAAAATA
  GACTGTTTGG AATACATAGG GCAAGCTGGG TATAGTGGCA CATGCCTTTA ATCCCAACAC
  Y
  GGAGAGGCAG AAACAGGTAG ATCTCTACTC TAAGTTCGAG GCTAGCCTGG TCTACAGAGC
  ATGGCCAGTT CCAGGACAGC CAGGGCTACA CAGAGAACCT TGTCTCAGGG AAGGAAAAGA
  AAGAAAAGAA AGGAAAGAAG AGAAGAGAGG AGAGGAGAGG AGAGGAGAGG AGAGGAGAGG
  AGAGGAGAGG AGAGGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363336919	MGP_WTSI_4_133897835	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222433638					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363336919	MGP_WTSI_4_133897835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	1002 bp proximal
Rr601645	regulatory region 601645	771 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	1261 bp upstream
Tssr39548	transcription start site region 39548	1223 bp upstream
Tssr39549	transcription start site region 39549	1278 bp upstream
Tssr39550	transcription start site region 39550	1573 bp upstream
Tssr39551	transcription start site region 39551	1603 bp upstream
Tssr39552	transcription start site region 39552	1678 bp upstream
Tssr39553	transcription start site region 39553	1712 bp upstream
Tssr39554	transcription start site region 39554	1763 bp upstream
Tssr39555	transcription start site region 39555	1962 bp upstream