rs222435872 SNP Detail

Summary

• ID
  rs222435872
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12663486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTTTAT GAACAGCCTG
  GAGTTCAACA GCAGCACTCT GACAGGCCAT GCCCATTACC CCTGAGCTGG AAAATATGCT
  GACCCACAGG ACCACTAAGA AGTCTCCAAG CAGAGACTGA ATACATATAG TATCATTAAA
  TATTAATATA TGTATATTCA CACTCCTCTA AATATTACAT GTGACTCGGG GAGGGATGCG
  A
  GGTCTCCTGC TGTAGCTCAG GCTACCCTGG AACTCATAGC AATCTTCTTG GCTCAGCCAC
  CCAAGTTCTA AGATTACAGG TATGAGAACC ACCACACCCA ACGTGTCTGA TATCTTTCCC
  CCTCCCTCTT TTAGATTGCC CTACAGAGTC TCATATACCC CAGGCTAGCC ATACATTTGC
  AGTGTAGCTG AGGCTGGCCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss387763375	MGP_WTSI_13_12740864	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs222435872					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387763375	MGP_WTSI_13_12740864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12663486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5282	CpG island 5282	1556 bp proximal
Gpr137b-ps	G protein-coupled receptor 137B, pseudogene	within coordinates
Rr475034	regulatory region 475034	within coordinates
Rr475035	regulatory region 475035	330 bp proximal
Rr475036	regulatory region 475036	1781 bp proximal
Tssr121467	transcription start site region 121467	1586 bp downstream
Tssr121468	transcription start site region 121468	1721 bp downstream