rs222438290 SNP Detail

Summary

• ID
  rs222438290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76115030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGAACA GGCTGCCCTC
  CAGATAGCTA CCCTCCAACT GCCTGCTGTC TCCCATGGTG CCTTTCGCCT TGTCTTTCCC
  ATCCTTAGGG ACTGGCAGCT CCTGAAAGGA ACAGCTGGAC TCTGGCTCAC ACGGAGGTTC
  TAGGGCTCTC ACAGATTAAA CATCTTCTCC TCTCCAGGTG GCAATGTGCT CCCACCCTGA
  R
  ATGGCACACA AGACTGGAGA AGCGGTTTGA CCTCAAGAGA CCAAGAAATG ATTCCAACTG
  GAGATGGGCA CATGGACCCG TTTCCAGGAG ACCACTGCTG AGCTGTTGCA ACAAGAAGCC
  AGACGTCAGC TCTTTAAAAG TCCTCCAACC TCCTGCAGCT ACCAAGGACG AGCCAGCAGG
  TGGAGCTGTG CTACCTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611234	MGP_WTSI_15_76061260	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222438290					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611234	MGP_WTSI_15_76061260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76115030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7220	CpG island 7220	940 bp distal
Cpgi7221	CpG island 7221	1025 bp proximal
Plec	plectin	Intron
Rr504677	regulatory region 504677	1344 bp distal
Rr504678	regulatory region 504678	843 bp distal
Rr504679	regulatory region 504679	169 bp proximal
Rr504680	regulatory region 504680	538 bp proximal
Tssr134944	transcription start site region 134944	1319 bp upstream
Tssr134945	transcription start site region 134945	1290 bp upstream
Tssr134946	transcription start site region 134946	1216 bp downstream
Tssr134947	transcription start site region 134947	1231 bp downstream
Tssr134948	transcription start site region 134948	1249 bp downstream
Tssr134949	transcription start site region 134949	1724 bp downstream