rs222440451 SNP Detail

Summary

• ID
  rs222440451
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138233157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCCGTCA CGTGGGCAGG
  AGCCGGCCAA TCCGGTTTGA ATCTCATTTT TTTCCTCTCG CCCCCCCTTC AGGAGCGGTT
  GTGCGATCAG ATCGATCTAA GATGGCGACT GTGGAACCGG TGAGTATTGC CTTCGGCCCC
  CACCCCCGAG CTCCCCGCGC TCCGGCTTCC TCCGCTCAGG GACTCCCGCA GGACGGCGTT
  M
  CCGGCGCGCA CGGCGCCTCC CGCCGCGTCC GGTCCCTGCC CGCCCCCGGC CTGACCTTCG
  GCGGGCAGCC TCGGCGCCGG GAGGCTGGCG GCGGCAGCGT GGAGCGCACA CGCCGTGTGG
  GGGCCCGGGC ACCGGGGCGG TGGGGGGAGG GGCGCCGCGC GGGGCCGCGA TGCGGCGGGC
  GGAGGGCGGC TCGGGACACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912470	MGP_WTSI_3_138190360	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222440451					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912470	MGP_WTSI_3_138190360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138233157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	within coordinates
Eif4e	eukaryotic translation initiation factor 4E	Intron
Gm64814	predicted gene, 64814	1148 bp upstream
Mir1956	microRNA 1956	911 bp downstream
Rr398072	regulatory region 398072	167 bp downstream
Rr586156	regulatory region 586156	1207 bp distal
Rr586157	regulatory region 586157	658 bp distal
Rr586158	regulatory region 586158	90 bp distal
Rr586159	regulatory region 586159	471 bp distal
Rr586160	regulatory region 586160	within coordinates
Rr586161	regulatory region 586161	248 bp proximal
Tssr31989	transcription start site region 31989	1218 bp downstream
Tssr31990	transcription start site region 31990	960 bp downstream
Tssr31991	transcription start site region 31991	938 bp downstream
Tssr31992	transcription start site region 31992	875 bp downstream
Tssr31993	transcription start site region 31993	845 bp downstream
Tssr31994	transcription start site region 31994	814 bp downstream
Tssr31995	transcription start site region 31995	765 bp downstream
Tssr31996	transcription start site region 31996	107 bp downstream
Tssr31997	transcription start site region 31997	1198 bp upstream
Tssr35898	transcription start site region 35898	1142 bp upstream
Tssr35899	transcription start site region 35899	433 bp upstream
Tssr35900	transcription start site region 35900	394 bp upstream