rs222450867 SNP Detail

Summary

• ID
  rs222450867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53747438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCTTTGC GCGAGGCTGA
  CCTCGGGATG ACCCCAGCTC GCATCGGGGA GAAGCGGCGA AAGGCACAGA GCTTATCCCC
  TAATGCTTTT CCCCTGCAGA GCTCTTGGGA AGGGTCAGCT CACGCGGCGA TCACGCCTGT
  CTCGCCGCGT GTGCGGGTCG TGCGGGAGCA AATGAATGGA GACAGTCGCT GGCAGGTCAC
  Y
  GGGGACCGGG GCTCTGTCCC GATCTCCGCC GCTCCGGCAC CTGATACTGA GATTAGCATA
  AGGGAGGTGT CCAGTGAACG TCGGAATGAA TGAAAAAGGC TGGGAACCCG CGGCGAGCGG
  GAAGCCACTT GGAAAACACC CACTCGAGGA GGCGTCTCCT CTAGGCCTGT GAGACGCTCG
  CATTTTCCCA GGACCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963851	MGP_WTSI_5_53981335	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222450867					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963851	MGP_WTSI_5_53981335	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53747438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	1010 bp downstream
Tssr46224	transcription start site region 46224	1329 bp downstream
Tssr46225	transcription start site region 46225	1131 bp downstream
Tssr46226	transcription start site region 46226	652 bp downstream
Tssr46227	transcription start site region 46227	243 bp upstream
Tssr46228	transcription start site region 46228	257 bp upstream
Tssr46229	transcription start site region 46229	326 bp upstream
Tssr46230	transcription start site region 46230	357 bp upstream
Tssr46231	transcription start site region 46231	560 bp upstream
Tssr46232	transcription start site region 46232	577 bp upstream
Tssr46233	transcription start site region 46233	625 bp upstream
Tssr46234	transcription start site region 46234	963 bp upstream
Tssr46235	transcription start site region 46235	1137 bp upstream
Tssr46236	transcription start site region 46236	1152 bp upstream
Tssr46237	transcription start site region 46237	1304 bp upstream
Tssr46238	transcription start site region 46238	1370 bp upstream
Tssr46239	transcription start site region 46239	1433 bp upstream
Tssr46240	transcription start site region 46240	1500 bp upstream
Tssr46241	transcription start site region 46241	1821 bp upstream
Tssr51023	transcription start site region 51023	831 bp upstream
Tssr51024	transcription start site region 51024	82 bp downstream
Tssr51025	transcription start site region 51025	476 bp downstream