rs222455377 SNP Detail

Summary

• ID
  rs222455377
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52175818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGAAAG AAAAATACCC
  CACCGCCCCC CACCAACCTA CTGCCGCCTC CCGAGGGAAG GCAGCGCCCG CCCAGGCCCG
  CGTTCATTGG CTGCTTCGGC GGAGACTTCG CGCGTCCATT GGCCGCGCAG CCTGTCAGTC
  AGGGGCGGGG CGGCGCGCGC GCCGCCGCGG GCGGGGAGCC CGCTGCAGAT CCCGTAAGAC
  K
  GGAGTCTGCG GAGTCGCTTC AGTCCCCGCC GCCGCCACAT TCAACAGGCA GCAGCGCCGC
  TGTCGCGCGG CCGCGGAGAG CTAGAGCGGC CCGCAGCGTC CGCCCGTCTG CCTTGGCGTC
  CGCGGCCCTT GTCAGCGGGA GCGCGGTGCC CGAGCTGCCG GGCTCCGCGG CCTGGTCGGT
  GCCCCGTCCT AGGCACGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357951490	MGP_WTSI_3_52072319	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222455377					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357951490	MGP_WTSI_3_52072319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52175818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13156	CpG island 13156	within coordinates
Foxo1	forkhead box O1	mRNA-UTR
Gm20402	predicted gene 20402	38 bp downstream
Rr397666	regulatory region 397666	9 bp downstream
Rr576489	regulatory region 576489	1382 bp distal
Rr576490	regulatory region 576490	51 bp distal
Rr576491	regulatory region 576491	528 bp proximal
Rr576492	regulatory region 576492	1028 bp proximal
Tssr29089	transcription start site region 29089	9 bp downstream
Tssr29090	transcription start site region 29090	within coordinates
Tssr29091	transcription start site region 29091	10 bp upstream
Tssr29092	transcription start site region 29092	1801 bp upstream