rs222455383 SNP Detail

Summary

• ID
  rs222455383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4032691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCAAGA TCTGTCTGAT
  AACACTGCTG CTAAGATGTG GGCCAGAAGG AAAGTACACC CGCAGTAACG GGGGCGCTCA
  GGGAATGCAG GTGGCTTGTC TTCTTTGAGA TTTAATTTTC TCTAGGAATT ATTTTCCATT
  GTATTTCATA AAAATAAAAT AAATGTTGGC CTAGGATATA GGAAACATTA AACAGAGAAC
  Y
  CCTTGCAATT CCTTCCCAGC CGGATGATAC AGCATGATCT GTGGCAGCTG GGGGTCTCTG
  GGGGGGGGGG GGGGAGTCAG AGGACACCTG GCTTTCTGCT TTGTGCATTG TCCAGCACCA
  GGAAGTGCCC TTGTGCCCAA GCTTGAACAG GGACAAACCA TACCTGAATT GAGTACATGA
  TGATTTTAAA GCAACGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873068	CHEV_12_3982691	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222455383					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4032691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4371	CpG island 4371	420 bp distal
Efr3b	EFR3 homolog B	within coordinates
Gm48001	predicted gene, 48001	1974 bp upstream
Gm59670	predicted gene, 59670	2 bp downstream
Rr256319	regulatory region 256319	910 bp proximal
Rr265366	regulatory region 265366	290 bp distal
Rr267337	regulatory region 267337	357 bp proximal
Rr369491	regulatory region 369491	118 bp downstream
Rr403219	regulatory region 403219	1025 bp downstream