rs222457580 SNP Detail

Summary

• ID
  rs222457580
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30732578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACAGTAC TAATTATCAC ATAGTCACTG GAGACCGGCT
  GGGGGGTGGG GGTGGGGGAT CAATCTGGAC CTCAGGAAGC TCCCAGTGAA GGGGGACAGC
  W
  AGATGGCTCA ACAAGTAAAG GTGTTTGCTG CTGAGCCAGA TGTCCTGAGT TTTGGGCAAA
  AAGAGAAAAC CAGGGGCTAA AGAGACTGCT CAGTGGTTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322138565	CHEV_7_31818172	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222457580					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30732578 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Rr644977	regulatory region 644977	1013 bp distal
Rr644978	regulatory region 644978	340 bp proximal
Rr644979	regulatory region 644979	1592 bp proximal
Rr644980	regulatory region 644980	1850 bp proximal
Tssr65829	transcription start site region 65829	230 bp downstream