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rs222458374 SNP Detail
Summary
  • ID
    rs222458374
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44384053 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCAAAGCTA TTAGTACATT
CATCTGGAAA CTGTTATAAA TCCTTCTTTG AGAGGATCTG AAAGATGTCC TTTACTTAAA
GACACCAGGA CCTCAATGTA GCCTTGCTTT GGAACATGGC CTGAATCAGA TCTGGGGAAT
AAGATCAGAA GAGAAAGAAA GAAAGCTGAT TTTATTGTTC ATCTTATAAA TCAGGCATCT
R
TGACCTAGAA AAGTAAAACC ATCTCAAAGG CATTTCCAGA GGGCTATAGG TCAGTAGATC
TACAGTGATT TTTCTATGAG ATTTTCTACT TCAACAAAAC AGCTCAGAGC GCGTGTTCAA
TTAACATAGG GGGGAAAAAA GGCTCTGATT CTACAAGTGA ACTGAGTGTT TGGCACCTTA
CACAGCCAGT TCTAAAAACC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552083 MGP_WTSI_19_44470104 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222458374 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552083 MGP_WTSI_19_44470104 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384053 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 1541 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 1391 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 1499 bp proximal
Rr548236 regulatory region 548236 1146 bp distal
Rr548237 regulatory region 548237 196 bp distal
Rr548238 regulatory region 548238 1255 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 mRNA-UTR
Tssr5524 transcription start site region 5524 745 bp downstream
Tssr156606 transcription start site region 156606 794 bp upstream
Tssr156607 transcription start site region 156607 1118 bp upstream
Tssr156608 transcription start site region 156608 1527 bp upstream
Tssr156609 transcription start site region 156609 1737 bp upstream
Tssr159446 transcription start site region 159446 1021 bp upstream
Tssr159447 transcription start site region 159447 846 bp upstream
Tssr159448 transcription start site region 159448 820 bp upstream
Tssr159449 transcription start site region 159449 757 bp upstream
Tssr159450 transcription start site region 159450 743 bp upstream
Tssr159451 transcription start site region 159451 663 bp upstream
Tssr159452 transcription start site region 159452 369 bp upstream
Tssr159453 transcription start site region 159453 300 bp upstream
Tssr159454 transcription start site region 159454 281 bp upstream
Tssr159455 transcription start site region 159455 2 bp downstream
Tssr159456 transcription start site region 159456 124 bp downstream
Tssr159457 transcription start site region 159457 168 bp downstream
Tssr159458 transcription start site region 159458 198 bp downstream
Tssr159459 transcription start site region 159459 288 bp downstream
Tssr159460 transcription start site region 159460 325 bp downstream
Tssr159461 transcription start site region 159461 384 bp downstream
Tssr159462 transcription start site region 159462 412 bp downstream
Tssr159463 transcription start site region 159463 458 bp downstream
Tssr159464 transcription start site region 159464 481 bp downstream
Tssr159465 transcription start site region 159465 505 bp downstream
Tssr159466 transcription start site region 159466 526 bp downstream
Tssr159467 transcription start site region 159467 579 bp downstream
Tssr159468 transcription start site region 159468 827 bp downstream
Tssr159469 transcription start site region 159469 897 bp downstream
Tssr159470 transcription start site region 159470 914 bp downstream
Tssr159471 transcription start site region 159471 931 bp downstream
Tssr159472 transcription start site region 159472 967 bp downstream
Tssr159473 transcription start site region 159473 986 bp downstream
Tssr159474 transcription start site region 159474 1011 bp downstream
Tssr159475 transcription start site region 159475 1056 bp downstream
Tssr159476 transcription start site region 159476 1074 bp downstream
Tssr159477 transcription start site region 159477 1094 bp downstream
Tssr159478 transcription start site region 159478 1104 bp downstream
Tssr159479 transcription start site region 159479 1128 bp downstream
Tssr159480 transcription start site region 159480 1156 bp downstream
Tssr159481 transcription start site region 159481 1205 bp downstream
Tssr159482 transcription start site region 159482 1305 bp downstream
Tssr159483 transcription start site region 159483 1396 bp downstream
Tssr159484 transcription start site region 159484 1430 bp downstream
Tssr159485 transcription start site region 159485 1556 bp downstream
Tssr159486 transcription start site region 159486 1563 bp downstream
Tssr159487 transcription start site region 159487 1644 bp downstream
Tssr159488 transcription start site region 159488 1661 bp downstream
Tssr159489 transcription start site region 159489 1715 bp downstream
Tssr159490 transcription start site region 159490 1817 bp downstream
Tssr159491 transcription start site region 159491 1852 bp downstream
Tssr159492 transcription start site region 159492 1903 bp downstream
Tssr159493 transcription start site region 159493 1929 bp downstream
Tssr159494 transcription start site region 159494 1949 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory