rs222462588 SNP Detail

Summary

• ID
  rs222462588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8058308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTATCAT ATCCGTGTAA ATCTAGCAAA
  ATCAATCCAT AATCTCTATT TATTTGTTGA AAACGTTGAT CTTAACCAAG TCAGTAGTAG
  TAACACCTCT TGGATCCAAA ATGTGGATTC CAATTATCAA GTCAGAATCC AAATTCAAGA
  R
  AAACTACAGC AGCTCAGGAC ACAAATTCAG AATATAGACA TTCAGCAGCT TGCTGCAGAG
  GTAAAACGAC AGATGGACGC TATTGATGTC ACAATGCATT TAGATCAATT GAGAACTGCA
  ATTCTATTCC AAAGAATAAG TGACATTATT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323884664	CHEV_12_8015114	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222462588					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8058308 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	388 bp upstream
Tssr112630	transcription start site region 112630	1916 bp downstream
Tssr112631	transcription start site region 112631	1679 bp downstream
Tssr112632	transcription start site region 112632	1648 bp downstream
Tssr112633	transcription start site region 112633	1572 bp downstream
Tssr112634	transcription start site region 112634	1427 bp downstream
Tssr112635	transcription start site region 112635	1341 bp downstream
Tssr112636	transcription start site region 112636	876 bp downstream
Tssr112637	transcription start site region 112637	796 bp downstream
Tssr112638	transcription start site region 112638	731 bp downstream
Tssr112639	transcription start site region 112639	489 bp downstream
Tssr112640	transcription start site region 112640	447 bp downstream
Tssr112641	transcription start site region 112641	395 bp downstream
Tssr112642	transcription start site region 112642	321 bp downstream
Tssr112643	transcription start site region 112643	232 bp downstream
Tssr112644	transcription start site region 112644	18 bp downstream
Tssr112645	transcription start site region 112645	74 bp upstream
Tssr112646	transcription start site region 112646	100 bp upstream
Tssr112647	transcription start site region 112647	274 bp upstream
Tssr112648	transcription start site region 112648	286 bp upstream
Tssr112649	transcription start site region 112649	778 bp upstream
Tssr112650	transcription start site region 112650	837 bp upstream
Tssr112651	transcription start site region 112651	908 bp upstream
Tssr112652	transcription start site region 112652	932 bp upstream
Tssr112653	transcription start site region 112653	959 bp upstream
Tssr112654	transcription start site region 112654	975 bp upstream
Tssr112655	transcription start site region 112655	993 bp upstream
Tssr112656	transcription start site region 112656	1015 bp upstream
Tssr112657	transcription start site region 112657	1030 bp upstream
Tssr112658	transcription start site region 112658	1063 bp upstream
Tssr112659	transcription start site region 112659	1116 bp upstream
Tssr112660	transcription start site region 112660	1268 bp upstream
Tssr112661	transcription start site region 112661	1499 bp upstream
Tssr112662	transcription start site region 112662	1743 bp upstream
Tssr112663	transcription start site region 112663	1978 bp upstream