rs222464046 SNP Detail

Summary

• ID
  rs222464046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169312705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTACAG AGTTGTATGT
  AGCATAAGCA GAGAGGAATA AGAAAATTTA ATTTGCTAAT TAACACACTT GGGCTGTCTG
  CAGCTACCCA GTCCAAGTGC AACAGGGCTT CTTTAAAGAA TTAGAAAGTA TAAGAAAATG
  ACTTATGGAA ATGAAAGTTT ATTTCCAAAG TTTATTTCGA TATATCAATT GGAGTCGCCA
  W
  AGACATAGAA TTTGGTAACT CACCTTCAAT GCCTTCTCAT TAAGAAGCTA GAGGGAAAAG
  CTTGGAGAGG CCAAGAGAGC AAAGTCTCTT CTGTAGAGGC AGCCAGATGT TTCCTCTTCT
  GCCGAGTCCT GTCTAATCTT AGCCACCTGC TCACTCGTTA CGAGGCACAG GGACTCTTGC
  TTTCCCATTG CCTGCATAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320102002	CHEV_1_171415267	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222464046					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169312705 () rs orientation: forward

Symbol	Name	Function Class
Gm53643	predicted gene, 53643	within coordinates
Gm71126	predicted gene, 71126	within coordinates
Rr422941	regulatory region 422941	130 bp proximal
Rr422942	regulatory region 422942	702 bp proximal