rs222464890 SNP Detail

Summary

• ID
  rs222464890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126154258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGCTCC TACTAGGGAT
  GAGAAACAAC TGGTCCTGGG GTCTCTTCTC CAATTTCCTT TTTTTTTTCC TTCTTCCTTC
  CTTCCTTCCT TCCTTTCTCT TTTTTTTTTT TTTTTTTTTT TTGAGACCGG GCTTCTTGTA
  GCCCAGGCTG GACTTGTACA CGCTGTTTGA CTGAGAATGA CCTTGAATTT CTTACGTTCC
  R
  CTCTTACTGC CTTCTTTTCT AGGGAACAGG AGATGAGGGT CGGGAGGGAT ATCTGGTTTC
  CTAAAAGTCT TACTCCCTAC AGGTGGTAGA GAGGGAGAGG GAGGGGCTGG AATTCAAAAT
  TGAAGGGAGA AGTCCAAGAA CTTGGGGCCT GCTGTGTAGG GAGTTCTGTC TTGTTTGTGC
  TGGAGATGAG ACCCAGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363151750	MGP_WTSI_4_125937709	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222464890					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363151750	MGP_WTSI_4_125937709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126154258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	1625 bp proximal
Gm57069	predicted gene, 57069	1952 bp downstream
Rr398487	regulatory region 398487	573 bp downstream
Rr398488	regulatory region 398488	1747 bp upstream
Rr599660	regulatory region 599660	within coordinates
Rr599661	regulatory region 599661	1370 bp proximal
Rr599662	regulatory region 599662	1729 bp proximal
Rr599663	regulatory region 599663	1871 bp proximal
Trappc3	trafficking protein particle complex 3	1940 bp upstream
Tssr38986	transcription start site region 38986	75 bp downstream
Tssr38987	transcription start site region 38987	1904 bp upstream
Tssr38988	transcription start site region 38988	1917 bp upstream