rs222467842 SNP Detail

Summary

• ID
  rs222467842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:81973613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCATCG TCTGAAAACA
  AGGCCAAGAT ATGCATTTAG TTTTTAATGA AGAGTCTGGT TATATCTCCA GGGTTAAACA
  AAAAAACTGA TTTAATTCAC TGGGCCTGTT GGCTAATTCT GGCAATCAAA GAGGTATTTA
  TAACATAGGG CAAAGTGGAA AATGTGTCTT TTTTTTTTTT TTTTTCTTTA ATGACCTGGG
  R
  GGGTGGTGAT AATGAGGACA GGATAGAAAA AAAAAAAAAC TTGGGATAGG GACCCCCAAA
  GCAGCAGTTC CAAAATTGAC CTTGCTGGAG GCCAGGAACG CTGGGAGAGG ACTCTGGTTT
  CCGATTCCTT GTTTTAGCTT CGCCTCAAGG AGCATCTCTG GTTAGATCAA GACTGAGACA
  GCAGCCCAGA CTGGTGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389238122	MGP_WTSI_13_81964493	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222467842					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389238122	MGP_WTSI_13_81964493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:81973613 () rs orientation: forward

Symbol	Name	Function Class
Gm32836	predicted gene, 32836	within coordinates