rs222469495 SNP Detail

Summary

• ID
  rs222469495
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138802400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATCCTA AAGCCTGCCT
  TGATTTGTGG TGTCCAGCTT GTCACTCAGT ACAACAGTGT TTTCTGGCAT GATTCACCTG
  TGGGCGAGGT TTAAGTTTTT TTCTTCTCTG CTGTGACCAA ATACCTGACA AGAACAGGGT
  TGAAGGCAGA AGGAATTGTT TGGGCTCATG GTAAAGAAGG CACGGCAGAG TTCACTGTGA
  S
  TGGACTGTGC AGCTGGGTTG AGTCAGAAAG CAGAGAGCAG GGAATGCTGC CGCTCATTGT
  CTGCTTCTCA GTCAAGGGCC CTGTTCCATG GGATGGCGCC TCCCAGGCTC AGGACAGGTC
  CCCTCCCCTC AGTTAAACCT CTCTGGAGAC ACCTTATAGG CACACCAGTG GTGTCTCCTG
  GGTGATTCCA CACCAGCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373380620	MGP_WTSI_7_146408383	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	C	C	C	G	C	G	C	G	G	G	C	G	G	G	G	C	G	G	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222469495					SNP	G	G	G	G	G	G	C	C	C	G	C	G	C	G	G	G	C	G	G	G	G	C	G	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373380620	MGP_WTSI_7_146408383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138802400 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Tssr69706	transcription start site region 69706	1865 bp downstream