rs222475265 SNP Detail

Summary

• ID
  rs222475265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72538037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCATCAT TCTACCAAAC
  ACAGCCTCCA CCCCACCCAT CCCAACTCAC CACTCGTTTA TACACTGCAC TTGAGCCCTT
  CATCCTGACC TGAGTCCAGC CAAATACCTG TGCCCTAATC AGAGCTTACA CCCACTAACA
  TACTCCGGTA TGCCCTCCTC TCAACCCTGA GAAGAATCAC CTTCAAAGGG TGACTATGAA
  R
  TGACACTAAG AAGTGATTGA TGGGGTCCGA TGTGAAGGCA GGCCTGACCT TTCTACTCTC
  CATCTTGCCT ACAACTTACA GCAACTACCC AGGCTAGGAC AGATTGGGAT GGCTCTGGGT
  CACTGATCCT TGGACAAAAG CCTCAGATAC ATTCCCTCTG CCCCCAGGTT GTCTATCTGC
  ACTCCAACAA CATCACCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771585	MGP_WTSI_X_70739770	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222475265					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771585	MGP_WTSI_X_70739770	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72538037 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	437 bp distal
Rr6090	regulatory region 6090	1037 bp distal
Rr7747	regulatory region 7747	536 bp proximal
Rr10758	regulatory region 10758	510 bp distal
Tssr5633	transcription start site region 5633	1154 bp downstream
Tssr5634	transcription start site region 5634	266 bp downstream
Tssr5635	transcription start site region 5635	621 bp downstream
Tssr161220	transcription start site region 161220	1693 bp downstream
Tssr161221	transcription start site region 161221	1634 bp downstream
Tssr161222	transcription start site region 161222	1619 bp downstream
Tssr161223	transcription start site region 161223	1449 bp downstream
Tssr161224	transcription start site region 161224	1395 bp downstream
Tssr161225	transcription start site region 161225	1217 bp downstream
Tssr161226	transcription start site region 161226	1166 bp downstream
Tssr161227	transcription start site region 161227	1116 bp downstream
Tssr161228	transcription start site region 161228	167 bp upstream
Tssr161229	transcription start site region 161229	200 bp upstream
Tssr161230	transcription start site region 161230	224 bp upstream
Tssr161231	transcription start site region 161231	241 bp upstream
Tssr161232	transcription start site region 161232	292 bp upstream
Tssr161233	transcription start site region 161233	364 bp upstream
Tssr161234	transcription start site region 161234	384 bp upstream
Tssr161235	transcription start site region 161235	449 bp upstream
Tssr161236	transcription start site region 161236	492 bp upstream
Tssr161237	transcription start site region 161237	546 bp upstream
Tssr161238	transcription start site region 161238	582 bp upstream
Tssr161239	transcription start site region 161239	631 bp upstream
Tssr161240	transcription start site region 161240	645 bp upstream
Tssr161241	transcription start site region 161241	681 bp upstream
Tssr161242	transcription start site region 161242	714 bp upstream
Tssr161243	transcription start site region 161243	878 bp upstream
Tssr161244	transcription start site region 161244	902 bp upstream
Tssr161245	transcription start site region 161245	997 bp upstream
Tssr161246	transcription start site region 161246	1153 bp upstream
Tssr161247	transcription start site region 161247	1176 bp upstream
Tssr161248	transcription start site region 161248	1445 bp upstream
Tssr163547	transcription start site region 163547	187 bp downstream
Tssr163548	transcription start site region 163548	293 bp downstream
Tssr163549	transcription start site region 163549	370 bp downstream
Tssr163550	transcription start site region 163550	425 bp downstream
Tssr163551	transcription start site region 163551	510 bp downstream
Tssr163552	transcription start site region 163552	636 bp downstream
Tssr163553	transcription start site region 163553	722 bp downstream
Tssr163554	transcription start site region 163554	741 bp downstream
Tssr163555	transcription start site region 163555	768 bp downstream