rs222475838 SNP Detail

Summary

• ID
  rs222475838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96188928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGTAGG AAAAAGAGGA
  GACTCTCGGT CTCCAATACT GAAGACTCAA CATTTCTAAG ACAATTCCCC CCAGTATCTA
  GATTTACAGG GAACATCTTT GGTTCTAAAA ATCTGTAGCC AGGGATTCTT GCTACATCAT
  TTGGCCTGAG AGATAAGGAT AGATGAGGAG AGACCAAGCA AGGGTTGCAG GAAGAATAGA
  R
  ATGAAAACAA GTAAAGTTAC CTAGGCTGGG GTTTCCCCTT CATCACCAAG TTTAAGGACT
  ACTAGTTTCT TTCTCCAGGG CCCAGTCTCA GTCAAGACTG CAGCCAGGAC GGCTGAGCTG
  TGCTGGGCAT ACGGATGGTC GGCTTGCCAA ATAGCAATAG CAAATAGCTT CGGGGAGCAG
  CCAGAGGGAG AAACTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384366420	MGP_WTSI_11_96159416	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222475838					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366420	MGP_WTSI_11_96159416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96188928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	823 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	Intron
Rr455361	regulatory region 455361	579 bp proximal
Tssr3658	transcription start site region 3658	1151 bp upstream
Tssr104480	transcription start site region 104480	652 bp upstream
Tssr104481	transcription start site region 104481	682 bp upstream
Tssr104482	transcription start site region 104482	703 bp upstream
Tssr104483	transcription start site region 104483	944 bp upstream
Tssr104484	transcription start site region 104484	987 bp upstream
Tssr104485	transcription start site region 104485	1010 bp upstream
Tssr104486	transcription start site region 104486	1035 bp upstream
Tssr104487	transcription start site region 104487	1105 bp upstream
Tssr104488	transcription start site region 104488	1121 bp upstream