rs222476676 SNP Detail

Summary

• ID
  rs222476676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31123933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGGCACAG AGAGGCCTTC CCCGCCGAGG
  CCAGTGGCGC CAGGCCACTG AAACACAAGC TCCCACCCCC CCACCCCCCT TCTCATGTGT
  TTCAGGACAG GATTCTGGCA TCATTTTTCT TCAGTTTAAG ATCTCTAAAG CAAAAGACAC
  K
  CTTTCTCTCT TTTTTCATGC TCCCCAGCAT CTTGGTTCCT GGGAAAGCGG CCTGCTGCCC
  CAGTTCACAA CTGGCACCTT GTCCTCTCCA TCACGAGGGC TCTGCTGGCT TTGTTTCCTT
  TCCGTAGCGG GTGATTTATG TACCACCCTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889598	CHEV_9_31020222	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222476676					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31123933 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	822 bp upstream
Cpgi21527	CpG island 21527	88 bp distal
Gm69111	predicted gene, 69111	72 bp downstream
Rr206148	regulatory region 206148	within coordinates
Rr401293	regulatory region 401293	614 bp downstream
Tssr84218	transcription start site region 84218	1270 bp downstream
Tssr88645	transcription start site region 88645	813 bp upstream