rs222489406 SNP Detail

Summary

• ID
  rs222489406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178057854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATCCTA GTGAACCACC
  CACATAGTGC TGGAAGCTAA ACTGGGGTCC TCTGGAGGAT CAGTAGCTCT TGACTCTTGA
  GCCATCTCTC CAGCCCAGCA CTGATGATTA GTGATCTGGT AGGACAGAGA AAACAGAAGA
  ACTCAGGGAT ACCCTGCCCC TCCCCCTCTA GAGTTTTATC TCTGTGGGAT GAGGTGCCTC
  R
  TGTACAGTCT GTACTTTTAA AGACTGGCTT GCAATTAATT ACTGGATGGA TGAGTGAATG
  GATAGATAGG GGGAGCTTTA GAGTATAAGG CAAAACCAGT TAGTGTTATT CCCAGGGACT
  GTATATATGC GAGAATGGGT GGGGTTTAGA ATCCGTTCAC AGCACTCACT AAGCGATCTC
  GTACTGAATA ACTGCCGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356710505	MGP_WTSI_2_178150766	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222489406					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356710505	MGP_WTSI_2_178150766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178057854 () rs orientation: forward

Symbol	Name	Function Class
1700093E11Rik	RIKEN cDNA 1700093E11 gene	1417 bp downstream
Cpgi12875	CpG island 12875	848 bp distal
Fam217b	family with sequence similarity 217, member B	within coordinates
Ppp1r3d	protein phosphatase 1, regulatory subunit 3D	1598 bp upstream
Tssr796	transcription start site region 796	1116 bp upstream
Tssr797	transcription start site region 797	556 bp downstream
Tssr22178	transcription start site region 22178	1470 bp downstream
Tssr28060	transcription start site region 28060	1615 bp upstream
Tssr28061	transcription start site region 28061	1554 bp upstream
Tssr28062	transcription start site region 28062	543 bp downstream
Tssr28063	transcription start site region 28063	568 bp downstream