rs222497071 SNP Detail

Summary

• ID
  rs222497071
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125395056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGAACCA CACACTGTGA ATATAGAAAG CACTGGAAGA
  AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGACGACGA
  M
  GACGACGACT TACAGTTAGT TATATGTGTG TCCCTGGGTG TGGCTGCCGA TGGAGGCCAG
  AAGAAGCATC GGATCCCTTG GAGCAGGAAA CCACGGGTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	LP/J	MOLF/EiJ	NZB/BlNJ	PL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss369955275	MGP_WTSI_6_125368111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	A	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	LP/J	MOLF/EiJ	NZB/BlNJ	PL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs222497071					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369955275	MGP_WTSI_6_125368111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125395056 () rs orientation: forward

Symbol	Name	Function Class
D6Jpk2	DNA segment, Chr 6, Japan, Kominami 2	within coordinates
Gm66368	predicted gene, 66368	within coordinates
Gm66372	predicted gene, 66372	1536 bp downstream
Rr638702	regulatory region 638702	184 bp distal
Rr638703	regulatory region 638703	551 bp proximal
Rr638704	regulatory region 638704	816 bp proximal
Rr638705	regulatory region 638705	1266 bp proximal