rs222498330 SNP Detail

Summary

• ID
  rs222498330
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT TTAATCCCAG CACTTGGGAG
  K
  CAGAGGCAGG TGGATTTCTG AGTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323387270	CHEV_10_90544198	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222498330					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917315 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	730 bp proximal
Ikbip	IKBKB interacting protein	1487 bp upstream
Rr402144	regulatory region 402144	1401 bp upstream
Rr436975	regulatory region 436975	1668 bp distal
Rr436976	regulatory region 436976	282 bp proximal
Rr436977	regulatory region 436977	966 bp proximal
Tssr95222	transcription start site region 95222	638 bp upstream
Tssr95223	transcription start site region 95223	1571 bp upstream
Tssr95224	transcription start site region 95224	1583 bp upstream
Tssr95225	transcription start site region 95225	1628 bp upstream
Tssr98900	transcription start site region 98900	1103 bp downstream
Tssr98901	transcription start site region 98901	1200 bp downstream
Tssr98902	transcription start site region 98902	1230 bp downstream
Tssr98903	transcription start site region 98903	1251 bp downstream
Tssr98904	transcription start site region 98904	1330 bp downstream