rs222508767 SNP Detail

Summary

• ID
  rs222508767
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34152061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCCCT ATTAAGGAAG
  CATTCCTAAC CCATGAATGT TCAGGTGTAG GGTCCAGGGC ACCCGTCCCC ACTCTGTCTC
  TGAAATCTTG ATAGACGTCT TTACCCCTGC CAGGCTGTAG GCAGGCACTT CTAGGCTCCT
  GGAAGGTGCA TTCAGCTGCA GGATGTGAGG AAGCCAAGCT GGGTCTCCTG AGTCTTCCTA
  S
  ACACCCAGGC AGAGGAGTGT GTAAGCCATC GTGGGGAGCT CGGGAGAGGT AGAGTGGCTC
  TAGGCTGCTG CTTTATTAAA GAGGACCTTG ATGCCACCCA GGAATGGCCT AAGGGAGAAC
  GGCAGAGGGC GCCCCACGAC AGGAAGGAGG AACAGGGCTA AACAGGGCCA TGGATTGTCC
  TGCTGTCTGC GCAACTCCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364490739	MGP_WTSI_5_34337366	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222508767					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364490739	MGP_WTSI_5_34337366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34152061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	657 bp proximal
Gm42847	predicted gene 42847	1655 bp upstream
Nat8l	N-acetyltransferase 8-like	1267 bp upstream
Rr609648	regulatory region 609648	115 bp proximal
Rr609649	regulatory region 609649	777 bp proximal
Tssr45846	transcription start site region 45846	1292 bp upstream
Tssr45847	transcription start site region 45847	1331 bp upstream
Tssr45848	transcription start site region 45848	1377 bp upstream
Tssr45849	transcription start site region 45849	1402 bp upstream
Tssr45850	transcription start site region 45850	1693 bp upstream
Tssr45851	transcription start site region 45851	1868 bp upstream
Tssr45852	transcription start site region 45852	1892 bp upstream
Tssr45853	transcription start site region 45853	1922 bp upstream
Tssr45854	transcription start site region 45854	1981 bp upstream
Tssr50625	transcription start site region 50625	1819 bp downstream