rs222520618 SNP Detail

Summary

• ID
  rs222520618
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140426828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGGGCAT TTGTGCTCAG
  ATAGAATTTG CTCTCTCTTC TCTTCTTTCT TCTGTCCCGA GCAGACGCTC AATTAAAATG
  AAGTAAAAAG CCCAAGCACA AGTGTATGTT GGAGGGAGCA CTCCCTGCAT GGCCCGTAGG
  TGCACCTCAC TCTGTCACAT TGGTTACATA AGGTGAACAG CAGCCTACAT GTTCGCCTTT
  K
  CGTGTGTGCG CCCGCACCCC CATCTCAACC AGGGGCATCA CTCGGGCTTT CCCTGGGTCT
  GAAATAGTGA GGCATGGAGT GGCAGAGAAC ACTTTTCCCA TCCGACGAGG AGGGCTGGTT
  AGTGGGTGTT ATCCTCTGAG TGCTCTTCTT CCTTAGCACA GCCTCAGGAA AAACCAGTTT
  TGGAAGCACC ACACCTTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363501301	MGP_WTSI_4_140255432	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222520618					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501301	MGP_WTSI_4_140255432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140426828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	within coordinates
Cpgi15195	CpG island 15195	1548 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	356 bp upstream
Rcc2	regulator of chromosome condensation 2	1024 bp upstream
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	within coordinates
Rr603518	regulatory region 603518	534 bp proximal
Rr603519	regulatory region 603519	1035 bp proximal
Rr603520	regulatory region 603520	1743 bp proximal
Rr603521	regulatory region 603521	1893 bp proximal
Tssr39970	transcription start site region 39970	349 bp upstream
Tssr39971	transcription start site region 39971	418 bp upstream
Tssr39972	transcription start site region 39972	447 bp upstream
Tssr39973	transcription start site region 39973	469 bp upstream
Tssr39974	transcription start site region 39974	818 bp upstream
Tssr39975	transcription start site region 39975	954 bp upstream
Tssr39976	transcription start site region 39976	970 bp upstream
Tssr39977	transcription start site region 39977	1085 bp upstream
Tssr39978	transcription start site region 39978	1909 bp upstream
Tssr39979	transcription start site region 39979	1930 bp upstream
Tssr39980	transcription start site region 39980	1949 bp upstream
Tssr39981	transcription start site region 39981	1993 bp upstream
Tssr44270	transcription start site region 44270	126 bp downstream
Tssr44271	transcription start site region 44271	148 bp downstream
Tssr44272	transcription start site region 44272	282 bp downstream
Tssr44273	transcription start site region 44273	1552 bp downstream