rs222522458 SNP Detail

Summary

• ID
  rs222522458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132459984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGCAAC CACACAACCG
  CGGACCTGCC CTCCCGCCCC GCTAGTCCGG CAGGAAGGGG GCGGGGCAGT CGTCCGGGAG
  GCTGGGCTGC TGGGCGGAAC TTCCCCATCT CGCCCCGTCC GGGGTGGAGC GAGCCCGCGG
  CCCCGCCCCT ACACTGGCCC CACCGCCCAG ACCCCGCCCC CAGCCTGCCC TGTGCAGAGC
  Y
  AGGCCTCTAC TGGTTTGGAT TCTGCTTTTT GTTTTGTTTT TCTTTTTTGT TTGTTTTTTG
  TTTTTGTTTT GCGAGACAGG GTTTCTCTGA ATAGCCCTGG CTGTCCTGAA ACTCACTCTG
  TAGACCAGGC TGGCCTCGAA CTCAGAAATC CGCCTGCCTC TGCCTCCCAA GTGCTGGGAT
  TCCACCACCC CCGGCTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363300669	MGP_WTSI_4_132288588	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222522458					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363300669	MGP_WTSI_4_132288588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132459984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	40 bp distal
Cpgi14970	CpG island 14970	784 bp proximal
Rr398540	regulatory region 398540	within coordinates
Rr601049	regulatory region 601049	218 bp distal
Rr601050	regulatory region 601050	133 bp distal
Rr601051	regulatory region 601051	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	293 bp downstream
Tssr39417	transcription start site region 39417	830 bp downstream
Tssr43695	transcription start site region 43695	952 bp upstream
Tssr43696	transcription start site region 43696	235 bp upstream
Tssr43697	transcription start site region 43697	115 bp upstream
Tssr43698	transcription start site region 43698	87 bp upstream
Xkr8	X-linked Kx blood group related 8	127 bp upstream