rs222525038 SNP Detail

Summary

• ID
  rs222525038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115833960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAATACAT CAGACACAGA
  ATGACAGATG TCACTTGCTC TCACTTGCAT GTATGTGTGC TAAAATTTAA CTTTCTATAG
  AATAGGACAG TGGTTACCAA GGAGAAGGTT CAGGGAGGAA AGAATGAATG GAGGGTATAG
  CTAGTTTGAG GTTTCTGGTG GGTGGACTGA ATGATTTCTA GTGTTCTGTA GCCCAGTGGG
  R
  TAACTGTGGT GGAAAACAGC TAATTGAATA TTTCAAAATA GCTAGTAGAG AGGATCTGAA
  TGCTTTCAAT ACAAAGAGAT GGTTAATTAC AGAAACAATG GATAGGCTGA TTGTCAATCT
  CTGGTCATTG CATTTTGTTA AAATGTATCA AAATGCCACA CTGTGCTTCA TAAATATGTA
  CAACTACATG CCAAGTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894117	CHEV_3_115743229	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222525038					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115833960 () rs orientation: forward

Symbol	Name	Function Class
Rr583646	regulatory region 583646	653 bp proximal