rs222539336 SNP Detail

Summary

• ID
  rs222539336
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117583400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTACA GAGCTAAGGA
  TGACACAGAA CGGATCTCCC TGCTTCCACC CATTGAAGTG TCACATGCCT TGCAACTAAT
  GTGTAGTTTT AAGTTTTGGA CACTATTTCA TAGGTTTTTA TGATCTGTTT GCTTATGTCT
  CTGCCCGTTT TCTCCAGGAT ACCGTTTTTT TCTAATTGGC ACTGAAAAGA AGGTCTTTGC
  W
  TCAGAGGCAC AAGAGACTCT TTGATGAATT TTCCACAGTT AATTACGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATGGGTGCCT GTGTGACGGT
  CAGAGGATAA CTCGGAGTCA GTTCTCTCCG TCCACCAGAT GGACTGAATT CATGCTGTAG
  GGTTTGGGAA GCAAGCACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499189	CHEV_10_117184551	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222539336					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117583400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1710 bp distal
Cpgi2239	CpG island 2239	840 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	1532 bp distal
Rr439611	regulatory region 439611	1004 bp distal
Rr439612	regulatory region 439612	654 bp distal
Slc35e3	solute carrier family 35, member E3	1137 bp upstream
Tssr99471	transcription start site region 99471	1145 bp upstream
Tssr99472	transcription start site region 99472	1077 bp upstream