rs222540129 SNP Detail

Summary

• ID
  rs222540129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14952967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGTTAA GTTAGTATCA
  CCTCCGAATG TTGAACTGAG CAGACTGTCT AGAAACACCA GTGGCTTCCG GTGGCTGGTG
  TCTCCCTTCC CACAGCAATG ACCTAACAGC TCTCTTCTCA TCTCTAGGAC CAGAGAACTG
  GCACAAGGAC TTCCCCATTG CCAATGGAGA CCGGCAGTCC CCTGTGGACA TTGACACAGC
  R
  ACTGCCCAGC ATGACCCTGC CCTACAGCCT CTGCTCATAT CTTATGATAA AGCTGCGTCC
  AAGAGCATTG TCAACAACGG CCACTCCTTT AACGTTGAGT TTGATGACTC TCAGGACAAT
  GCAGGTCAGT GTTTAGGAAA ACATCCATCG GGCTTTTTAG CCAATAGTTA TTTTCGGTCT
  TAATGGAAAA TACAGGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357061107	MGP_WTSI_3_14887907	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222540129					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061107	MGP_WTSI_3_14887907	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14952967 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Coding-Synonymous
Cpgi12992	CpG island 12992	693 bp distal
Rr573722	regulatory region 573722	1469 bp distal
Rr573723	regulatory region 573723	1747 bp distal
Rr573724	regulatory region 573724	333 bp distal
Rr573725	regulatory region 573725	1400 bp distal
Rr573726	regulatory region 573726	717 bp distal
Rr573727	regulatory region 573727	664 bp distal
Rr573728	regulatory region 573728	482 bp distal
Rr573729	regulatory region 573729	731 bp proximal
Rr573730	regulatory region 573730	1162 bp proximal
Tssr826	transcription start site region 826	1587 bp downstream
Tssr827	transcription start site region 827	1480 bp downstream
Tssr828	transcription start site region 828	1424 bp downstream
Tssr829	transcription start site region 829	1338 bp downstream
Tssr830	transcription start site region 830	1292 bp downstream
Tssr831	transcription start site region 831	1259 bp downstream
Tssr832	transcription start site region 832	1186 bp downstream
Tssr28466	transcription start site region 28466	1207 bp downstream
Tssr28467	transcription start site region 28467	1048 bp downstream
Tssr28468	transcription start site region 28468	491 bp downstream