rs222545671 SNP Detail

Summary

• ID
  rs222545671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCAAGA ATGTCGAGAC
  TTAACGAAGG CTGATGGAAA CCCAGGAAGC CCAGTGGGCA GCTTCTGCCT AGGGCAGAGC
  CCACAAACCA GTGCGTCTGT GCAGAACGTC TGGATGGACA CCCATCATGC ATCAGTGCAA
  TAGAGTCTAG TAAGTGTCTC TAGCCAGGCT TGTCAGTTGT GCAGGAAACA AGGCCTGGTC
  Y
  TAGCAAACCT TAGCATATCT TCCCTTTTTA TTATAAATGG GTGGTTGTTT GGTTTGTTTA
  TTTTTATAAT TTTTACTGAT GCTCAGTAAC CATGAAAAAC TGTGCACATT CATGTACTAA
  TAGATCTGTA CCTATCTATC TCTGTACGCA TATATACAGT TCACTGTAGA AAACCACAGC
  TAGCGAGCAT CGCAGACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395338855	MGP_WTSI_16_8621301	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222545671					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395338855	MGP_WTSI_16_8621301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439072 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	within coordinates
Gm7541	predicted gene 7541	1978 bp downstream
Gm9851	predicted gene 9851	within coordinates
Gm55031	predicted gene, 55031	1955 bp downstream
Rr511288	regulatory region 511288	946 bp distal
Rr511289	regulatory region 511289	459 bp distal
Tssr136994	transcription start site region 136994	1787 bp downstream
Tssr136995	transcription start site region 136995	1709 bp downstream
Tssr136996	transcription start site region 136996	1693 bp downstream
Tssr136997	transcription start site region 136997	1585 bp downstream
Tssr136998	transcription start site region 136998	1397 bp downstream