rs222549055 SNP Detail

Summary

• ID
  rs222549055
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8761747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCTCCG GCTCAGGCTC
  CGGCGCCGGG CTAGCAGCTC CCGCGTCCTC CTCCATGGCC GCGTCCCCGT GCGTCCGCGT
  CCGGGTCCCC GCGCTGCCCA CCGCTCGCAG CAGCGCGTCG GCCGACGGGG CGCAAGTTCC
  CCGCCCGCGG CGTCACCGGG CCGCGCCCCC GCGTCGCATG CCCCAGGCTC CGCTGGGTAC
  K
  AGCACCACTG CCAGGACTGG CACCTCGATC CCGGGCGACC GCGATTGACA ACTCCAGAAA
  CTTTTCCTAG CCCGGCCCCG CGCAGCAACA GGGTAGCTGG AGCAGAGTCC ACAACACTGG
  CTGCGGCGGG GAGTTCACGG GACCAGGGAG ACAAGAGCCA CACCGCACGG GTGCTGCGTC
  CTGCTTCGGG GACCGGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379374618	MGP_WTSI_10_8605801	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222549055					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379374618	MGP_WTSI_10_8605801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8761747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	within coordinates
Gm26674	predicted gene, 26674	within coordinates
Rr427411	regulatory region 427411	1807 bp distal
Rr427412	regulatory region 427412	57 bp proximal
Sash1	SAM and SH3 domain containing 1	within coordinates
Tssr92336	transcription start site region 92336	1905 bp downstream
Tssr96654	transcription start site region 96654	305 bp upstream
Tssr96655	transcription start site region 96655	118 bp upstream
Tssr96656	transcription start site region 96656	56 bp upstream
Tssr96657	transcription start site region 96657	12 bp downstream
Tssr96658	transcription start site region 96658	30 bp downstream
Tssr96659	transcription start site region 96659	89 bp downstream
Tssr96660	transcription start site region 96660	113 bp downstream
Tssr96661	transcription start site region 96661	198 bp downstream
Tssr96662	transcription start site region 96662	228 bp downstream
Tssr96663	transcription start site region 96663	522 bp downstream
Tssr96664	transcription start site region 96664	586 bp downstream