rs222553698 SNP Detail

Summary

• ID
  rs222553698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72534617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGCTGC TGGCCCTGAG
  CCAGGCCTTG CCCTTTGAGC AGAAGGGTTT CTGGGACTTC ACCTTGGATG ATGGGCTGCT
  CATGATGAAT GATGAGGAGG CTTCAGGTTC AGACACCACT TCAGGTGTCC CCGACCTGGA
  CTCTGTCACA CCTACCTTCA GTGCCATGTG TCCTTTCGGT TGCCACTGCC ACCTGCGGGT
  Y
  GTTCAGTGCT CTGACTTGGG TGAGTCACTA AGCACTTAGG CTAAGAGTGT ACAGAGAAGC
  ACAGGCCCTG CCTGGGAGCC CTTACTAAAA AGAATACATT TGCTACCCTG TGAGATGGGT
  TTAAAACTGT AGGAGTGGGG AGGTTGAGTC ACCACAGGCT GAGGTGTATG AGGGTGCTCA
  GAGTCCCTGC ATTTCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771542	MGP_WTSI_X_70736350	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222553698					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771542	MGP_WTSI_X_70736350	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72534617 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	within coordinates
Rr7746	regulatory region 7746	within coordinates
Tssr161208	transcription start site region 161208	224 bp downstream
Tssr161209	transcription start site region 161209	201 bp downstream
Tssr161210	transcription start site region 161210	182 bp downstream
Tssr161211	transcription start site region 161211	136 bp downstream
Tssr161212	transcription start site region 161212	70 bp downstream
Tssr161213	transcription start site region 161213	16 bp downstream
Tssr161214	transcription start site region 161214	303 bp upstream
Tssr161215	transcription start site region 161215	954 bp upstream
Tssr161216	transcription start site region 161216	1000 bp upstream
Tssr161217	transcription start site region 161217	1032 bp upstream
Tssr161218	transcription start site region 161218	1052 bp upstream
Tssr161219	transcription start site region 161219	1110 bp upstream
Tssr161220	transcription start site region 161220	1715 bp upstream
Tssr161221	transcription start site region 161221	1729 bp upstream
Tssr161222	transcription start site region 161222	1793 bp upstream
Tssr161223	transcription start site region 161223	1959 bp upstream
Tssr161224	transcription start site region 161224	1999 bp upstream
Tssr163544	transcription start site region 163544	391 bp downstream
Tssr163545	transcription start site region 163545	1039 bp downstream
Tssr163546	transcription start site region 163546	1070 bp downstream