rs222553792 SNP Detail

Summary

• ID
  rs222553792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72902043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCCTGC CCTGGGATAG
  GTCCTGCCAT CTCCCTTTCA TTATTTACTT TGGGTTACCC ATCTCACGTT CTCCAGGGAT
  CCTCAAGAGA GGACCTCGGT CATCAAAGTA TGAAACACTA CTCTGGCTCC ATCACAGGCC
  AGGCGAAGTT TAACACGGGT CATTGTGGCA GGAGCCGATC TCAGTGCTTT GTCAAGATAA
  R
  GGCTTATTTC TCCCCATCAG AGTAAAGTAG ATTGCTAGTC CCAATTTTAC ATGAGAAACT
  AAAGACCCAG GGGCTTTAAA TAGCTGGGCC AAGGGTTACA CAGCTAGAAA TGGCGGGGTC
  AAGATACACG CCAAGGGGCC CTAGCTTGTA ACTGTTAACT TAGATTAGGG ATCCCAATTA
  GAAATGCAAA GCACTTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087489	MGP_WTSI_1_72909458	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222553792					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087489	MGP_WTSI_1_72909458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72902043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	280 bp distal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr22903	regulatory region 22903	958 bp proximal
Rr22904	regulatory region 22904	1558 bp proximal
Rr34509	regulatory region 34509	843 bp distal
Tssr7342	transcription start site region 7342	505 bp downstream
Tssr7343	transcription start site region 7343	1015 bp upstream
Tssr12191	transcription start site region 12191	1845 bp upstream
Tssr12192	transcription start site region 12192	1365 bp upstream
Tssr12193	transcription start site region 12193	1212 bp upstream
Tssr12194	transcription start site region 12194	1013 bp upstream
Tssr12195	transcription start site region 12195	661 bp upstream
Tssr12196	transcription start site region 12196	578 bp upstream
Tssr12197	transcription start site region 12197	559 bp upstream
Tssr12198	transcription start site region 12198	505 bp upstream
Tssr12199	transcription start site region 12199	330 bp downstream