rs222555958 SNP Detail

Summary

• ID
  rs222555958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAGCT GCAATGGAAG
  ACTGCTCAGT ACACAGGATG CCCTGGGGAC CGTCCTCCAA AAGGAGAAAC AAAAGTCTCT
  GCTGAGGTCT TCTTCCTCAA AGCAGCTGCT GACTACACAT AAGCATCATG TCCAACAGAC
  AAACACGCAA TCAGCACTCA GGACACTCAG GGCCAGCCTG ATGCTCCTGA GGTATCGTGA
  R
  ACTTGGCCTG GTGAGCACAA GCTACCGGGT ATGACAACTT GCACCTCTTT GTTGGCAGCC
  AAGAGTCTCT CACAAGTGTA CTAGCAGTCT GTGCAGTTGA ATCCTGCAGG ACTCTTCTGT
  GACAGCCAGG AGAGATTGAC CGTTTCTGGG AACTCTGTTG TGGGGAGTCT GGATTTAGTC
  TCTTCAAGTG CTCTGATTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350399233	MGP_WTSI_1_90161790	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs222555958					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399233	MGP_WTSI_1_90161790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192937 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Tssr12870	transcription start site region 12870	350 bp upstream